About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40919162_40920601_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40919162 - 40920601
Intron Length:
1440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTCAGTTTT
5'SS Class:
major
3'SS Sequence:
GTTTGTTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
AGGTATTGAATA
Flanking Amino Acid:
SCTQGEEASLR*
Intron Amino Acid Position:
1170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.3
80.5
34.9
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
80
0.68
0.8
77.9
36.6
Minor 5ss
41.7
-0.9
2.9
56
42.4
Minor BPS
48.8
-0
1.6
56.38
36.7

Associated Gene:

Gene:
SLC4A7
Ensembl Gene ID:
ENSAPLG00000004253
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042560
40919156 - 40968808
49653