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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40919162_40920887_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40919162 - 40920887
Intron Length:
1726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
AGGTATTGAATA
Flanking Amino Acid:
LNFPVKTLKYSVDPSIVNIS
Intron Amino Acid Position:
1066

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
80
0.68
0.8
77.9
36.6
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
48.8
-0
1.6
56.38
36.7

Associated Gene:

Gene:
SLC4A7
Ensembl Gene ID:
ENSAPLG00000004253
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026437
40917152 - 40999537
82386
ENSAPLT00000045188
40918313 - 41010830
92518
ENSAPLT00000025739
40756860 - 40968808
211949
ENSAPLT00000044648
40918313 - 40968808
50496
ENSAPLT00000018499
40918313 - 41023690
105378
ENSAPLT00000034918
40917152 - 40968808
51657
ENSAPLT00000029136
40918313 - 40990694
72382