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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40920654_40920887_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40920654 - 40920887
Intron Length:
234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
CCATCTTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
CCATCTTGAACA
Flanking Amino Acid:
LNFPVKTLKYRSDDSISTSC
Intron Amino Acid Position:
1152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
65
0.34
1
61
38.8
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
61.2
0.35
1.5
64.69
41.9

Associated Gene:

Gene:
SLC4A7
Ensembl Gene ID:
ENSAPLG00000004253
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004504
40918335 - 40968808
50474
ENSAPLT00000042560
40919156 - 40968808
49653