Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40921816 - 40922066

Intron Length:

251

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTTAT

5'SS Class:

strong_major

3'SS Sequence:

TGATTCCCTTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATGAT

U12 Branch Point Sequence:

TTTAATATAAAT

Flanking Amino Acid:

SAAAVVFPMMVLALVFIRKL

Intron Amino Acid Position:

1075

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.2

0.95

0.8

85.8

25.5

Major BPS

84.6

0.86

41.2

Major PPT

66.6

0.37

1.1

69.3

37.1

Minor 5ss

-0.9

2.9

43.6

Minor BPS

49.9

0.08

1.9

76.39

39.4

Associated Gene:

Gene:

SLC4A7

Ensembl Gene ID:

ENSAPLG00000004253

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025739

40756860 - 40968808

211949

ENSAPLT00000042560

40919156 - 40968808

49653

ENSAPLT00000019964

40917152 - 40968808

51657

ENSAPLT00000034918

40917152 - 40968808

51657

ENSAPLT00000018499

40918313 - 41023690

105378

ENSAPLT00000029136

40918313 - 40990694

72382

ENSAPLT00000045188

40918313 - 41010830

92518

ENSAPLT00000004504

40918335 - 40968808

50474

ENSAPLT00000026437

40917152 - 40999537

82386

ENSAPLT00000044648

40918313 - 40968808

50496

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40921816_40922066_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: