Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40922241 - 40922642

Intron Length:

402

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAATCC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCAATGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

AAATCATTAACT

Flanking Amino Acid:

MGVSSLKGIQFFDRIKLFGM

Intron Amino Acid Position:

1017

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

0.9

71.9

32.2

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

83.3

0.75

0.9

33.2

Minor 5ss

38.6

-1.3

3.1

51.6

45.1

Minor BPS

71.3

0.75

1.5

82.53

37.6

Associated Gene:

Gene:

SLC4A7

Ensembl Gene ID:

ENSAPLG00000004253

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025739

40756860 - 40968808

211949

ENSAPLT00000042560

40919156 - 40968808

49653

ENSAPLT00000019964

40917152 - 40968808

51657

ENSAPLT00000034918

40917152 - 40968808

51657

ENSAPLT00000018499

40918313 - 41023690

105378

ENSAPLT00000029136

40918313 - 40990694

72382

ENSAPLT00000045188

40918313 - 41010830

92518

ENSAPLT00000004504

40918335 - 40968808

50474

ENSAPLT00000026437

40917152 - 40999537

82386

ENSAPLT00000044648

40918313 - 40968808

50496

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40922241_40922642_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: