Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40922712 - 40924784

Intron Length:

2073

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAAGAG

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTTCTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTGAT

U12 Branch Point Sequence:

GATTCTCCAAGT

Flanking Amino Acid:

LSVFMTSVLKFIPMPVLYGV

Intron Amino Acid Position:

994

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

68.4

36.7

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

92.8

0.96

0.6

88.9

20.3

Minor 5ss

29.1

-2.4

3.4

37.5

47.2

Minor BPS

46.4

-0.1

2.1

67.1

43.3

Associated Gene:

Gene:

SLC4A7

Ensembl Gene ID:

ENSAPLG00000004253

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025739

40756860 - 40968808

211949

ENSAPLT00000042560

40919156 - 40968808

49653

ENSAPLT00000019964

40917152 - 40968808

51657

ENSAPLT00000034918

40917152 - 40968808

51657

ENSAPLT00000018499

40918313 - 41023690

105378

ENSAPLT00000029136

40918313 - 40990694

72382

ENSAPLT00000045188

40918313 - 41010830

92518

ENSAPLT00000004504

40918335 - 40968808

50474

ENSAPLT00000026437

40917152 - 40999537

82386

ENSAPLT00000044648

40918313 - 40968808

50496

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40922712_40924784_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: