Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40925037 - 40925316

Intron Length:

280

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAAGCA

5'SS Class:

strong_major

3'SS Sequence:

CTTAATTTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATCAA

U12 Branch Point Sequence:

CTTTGCTTAATT

Flanking Amino Acid:

IINRKEHKLKKGCGYHLDLF

Intron Amino Acid Position:

910

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

0.9

71.1

32.5

Major BPS

0.72

80.3

31.7

Major PPT

82.5

0.73

0.9

75.9

37.6

Minor 5ss

30.1

-2.3

3.3

39.5

45.9

Minor BPS

73.1

0.8

1.8

87.41

38.9

Associated Gene:

Gene:

SLC4A7

Ensembl Gene ID:

ENSAPLG00000004253

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019964

40917152 - 40968808

51657

ENSAPLT00000034918

40917152 - 40968808

51657

ENSAPLT00000018499

40918313 - 41023690

105378

ENSAPLT00000029136

40918313 - 40990694

72382

ENSAPLT00000045188

40918313 - 41010830

92518

ENSAPLT00000004504

40918335 - 40968808

50474

ENSAPLT00000026437

40917152 - 40999537

82386

ENSAPLT00000044648

40918313 - 40968808

50496

ENSAPLT00000025739

40756860 - 40968808

211949

ENSAPLT00000042560

40919156 - 40968808

49653

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40925037_40925316_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: