Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40925479 - 40925919

Intron Length:

441

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGAAAC

5'SS Class:

strong_major

3'SS Sequence:

TTTATTTTATCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTTAT

U12 Branch Point Sequence:

TTTTAGTGAATT

Flanking Amino Acid:

PKLHVPEKFEPTRKDRGWFI

Intron Amino Acid Position:

856

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

0.9

77.9

29.9

Major BPS

88.7

0.96

0.8

36.5

Major PPT

85.4

0.8

0.9

85.8

33.2

Minor 5ss

35.5

-1.6

44.2

37.3

Minor BPS

53.1

0.17

2.3

81.93

39.6

Associated Gene:

Gene:

SLC4A7

Ensembl Gene ID:

ENSAPLG00000004253

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004504

40918335 - 40968808

50474

ENSAPLT00000026437

40917152 - 40999537

82386

ENSAPLT00000044648

40918313 - 40968808

50496

ENSAPLT00000025739

40756860 - 40968808

211949

ENSAPLT00000042560

40919156 - 40968808

49653

ENSAPLT00000019964

40917152 - 40968808

51657

ENSAPLT00000034918

40917152 - 40968808

51657

ENSAPLT00000018499

40918313 - 41023690

105378

ENSAPLT00000029136

40918313 - 40990694

72382

ENSAPLT00000045188

40918313 - 41010830

92518

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40925479_40925919_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: