Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40926034 - 40926949

Intron Length:

916

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTAGA

5'SS Class:

strong_major

3'SS Sequence:

CTTTTCTTTATAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATGAT

U12 Branch Point Sequence:

TTTTCTTTATAG

Flanking Amino Acid:

FKTKRYFPTKVRSTISDFAV

Intron Amino Acid Position:

818

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

1.1

38.6

Major BPS

76.8

0.67

40.9

Major PPT

88.2

0.86

0.6

24.2

Minor 5ss

40.6

-1

2.6

51.9

44.6

Minor BPS

0.3

1.8

72.46

40.4

Associated Gene:

Gene:

SLC4A7

Ensembl Gene ID:

ENSAPLG00000004253

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025739

40756860 - 40968808

211949

ENSAPLT00000042560

40919156 - 40968808

49653

ENSAPLT00000019964

40917152 - 40968808

51657

ENSAPLT00000034918

40917152 - 40968808

51657

ENSAPLT00000018499

40918313 - 41023690

105378

ENSAPLT00000029136

40918313 - 40990694

72382

ENSAPLT00000045188

40918313 - 41010830

92518

ENSAPLT00000004504

40918335 - 40968808

50474

ENSAPLT00000026437

40917152 - 40999537

82386

ENSAPLT00000044648

40918313 - 40968808

50496

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40926034_40926949_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: