Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40929006 - 40932920

Intron Length:

3915

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTC|GTAAGTACT

5'SS Class:

major

3'SS Sequence:

TTCTTCCCTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAA

U12 Branch Point Sequence:

TTTTTTTTAACT

Flanking Amino Acid:

HNNLDKLTLYSCVCSEPQNP

Intron Amino Acid Position:

728

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.4

0.55

1.3

77.1

37.8

Major BPS

87.3

0.93

0.8

36.5

Major PPT

87.5

0.84

0.6

85.4

Minor 5ss

39.9

-1.1

2.8

53.6

37.3

Minor BPS

88.9

1.3

0.8

99.22

Associated Gene:

Gene:

SLC4A7

Ensembl Gene ID:

ENSAPLG00000004253

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025739

40756860 - 40968808

211949

ENSAPLT00000042560

40919156 - 40968808

49653

ENSAPLT00000019964

40917152 - 40968808

51657

ENSAPLT00000034918

40917152 - 40968808

51657

ENSAPLT00000018499

40918313 - 41023690

105378

ENSAPLT00000029136

40918313 - 40990694

72382

ENSAPLT00000045188

40918313 - 41010830

92518

ENSAPLT00000004504

40918335 - 40968808

50474

ENSAPLT00000026437

40917152 - 40999537

82386

ENSAPLT00000044648

40918313 - 40968808

50496

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40929006_40932920_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: