Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40933827 - 40936222

Intron Length:

2396

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATA|GTGAGTACA

5'SS Class:

major

3'SS Sequence:

TCCCCCCGAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAGTAAA

U12 Branch Point Sequence:

TCCCCCCGAACA

Flanking Amino Acid:

LLGEATQGRISAIESLFGAS

Intron Amino Acid Position:

602

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.7

0.58

72.2

32.1

Major BPS

67.4

0.43

1.1

67.9

36.3

Major PPT

62.5

0.28

57.5

31.9

Minor 5ss

32.4

-2

2.6

36.4

34.8

Minor BPS

49.7

-0

1.8

62.63

43.1

Associated Gene:

Gene:

SLC4A7

Ensembl Gene ID:

ENSAPLG00000004253

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004504

40918335 - 40968808

50474

ENSAPLT00000026437

40917152 - 40999537

82386

ENSAPLT00000044648

40918313 - 40968808

50496

ENSAPLT00000025739

40756860 - 40968808

211949

ENSAPLT00000042560

40919156 - 40968808

49653

ENSAPLT00000019964

40917152 - 40968808

51657

ENSAPLT00000034918

40917152 - 40968808

51657

ENSAPLT00000018499

40918313 - 41023690

105378

ENSAPLT00000029136

40918313 - 40990694

72382

ENSAPLT00000045188

40918313 - 41010830

92518

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40933827_40936222_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: