Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40936398 - 40937914

Intron Length:

1517

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGTGTTCA

5'SS Class:

strong_major

3'SS Sequence:

CTCACCTATTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTCAT

U12 Branch Point Sequence:

TTCATCTCACCT

Flanking Amino Acid:

HAGPELERTGRLFGGLILDI

Intron Amino Acid Position:

543

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.9

0.8

0.9

75.5

29.5

Major BPS

82.2

0.8

1.1

85.7

34.9

Major PPT

68.4

0.41

0.9

66.1

34.7

Minor 5ss

41.1

-1

2.6

50.2

46.2

Minor BPS

50.4

0.09

1.9

72.3

44.6

Associated Gene:

Gene:

SLC4A7

Ensembl Gene ID:

ENSAPLG00000004253

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042560

40919156 - 40968808

49653

ENSAPLT00000025739

40756860 - 40968808

211949

ENSAPLT00000019964

40917152 - 40968808

51657

ENSAPLT00000034918

40917152 - 40968808

51657

ENSAPLT00000045188

40918313 - 41010830

92518

ENSAPLT00000018499

40918313 - 41023690

105378

ENSAPLT00000029136

40918313 - 40990694

72382

ENSAPLT00000044648

40918313 - 40968808

50496

ENSAPLT00000004504

40918335 - 40968808

50474

ENSAPLT00000026437

40917152 - 40999537

82386

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40936398_40937914_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: