Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40938019 - 40939854

Intron Length:

1836

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAAAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTCCTTCTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCCT

U12 Branch Point Sequence:

TTTTCCTTCTTT

Flanking Amino Acid:

IEPPKSVPSQEKRKIPKFPN

Intron Amino Acid Position:

509

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

79.3

28.7

Major BPS

39.5

-0.6

4.3

85.7

34.9

Major PPT

86.1

0.81

0.6

85.4

21.9

Minor 5ss

32.1

-2

39.7

45.8

Minor BPS

48.4

-0

3.6

87.57

38.6

Associated Gene:

Gene:

SLC4A7

Ensembl Gene ID:

ENSAPLG00000004253

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025739

40756860 - 40968808

211949

ENSAPLT00000042560

40919156 - 40968808

49653

ENSAPLT00000019964

40917152 - 40968808

51657

ENSAPLT00000034918

40917152 - 40968808

51657

ENSAPLT00000018499

40918313 - 41023690

105378

ENSAPLT00000029136

40918313 - 40990694

72382

ENSAPLT00000045188

40918313 - 41010830

92518

ENSAPLT00000004504

40918335 - 40968808

50474

ENSAPLT00000026437

40917152 - 40999537

82386

ENSAPLT00000044648

40918313 - 40968808

50496

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40938019_40939854_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: