Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40941723 - 40943100

Intron Length:

1378

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAACAAA

5'SS Class:

major

3'SS Sequence:

GTTTTCTCCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTAAAA

U12 Branch Point Sequence:

GTTTTCTCCACA

Flanking Amino Acid:

SGLTEVPVPTRFLFLLLGPA

Intron Amino Acid Position:

430

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.4

0.53

1.1

67.8

Major BPS

64.3

0.36

71.3

30.3

Major PPT

82.2

0.72

0.8

76.7

32.1

Minor 5ss

38.5

-1.3

48.8

47.2

Minor BPS

55.4

0.16

Associated Gene:

Gene:

SLC4A7

Ensembl Gene ID:

ENSAPLG00000004253

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019964

40917152 - 40968808

51657

ENSAPLT00000034918

40917152 - 40968808

51657

ENSAPLT00000018499

40918313 - 41023690

105378

ENSAPLT00000029136

40918313 - 40990694

72382

ENSAPLT00000045188

40918313 - 41010830

92518

ENSAPLT00000004504

40918335 - 40968808

50474

ENSAPLT00000026437

40917152 - 40999537

82386

ENSAPLT00000044648

40918313 - 40968808

50496

ENSAPLT00000025739

40756860 - 40968808

211949

ENSAPLT00000042560

40919156 - 40968808

49653

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40941723_40943100_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: