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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40944054_40944732_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40944054 - 40944732
Intron Length:
679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAT
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTTGGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTACAC
U12 Branch Point Sequence:
TCCTTCTGTACA
Flanking Amino Acid:
RENSTVDFSKESASWHCSCG
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
89.4
23.3
Major BPS
57.7
0.19
1.2
66.7
40
Major PPT
66.8
0.38
1.1
64.2
41.5
Minor 5ss
36.8
-1.5
2.9
50.6
45.9
Minor BPS
51.1
0.03
1.8
63.18
43

Associated Gene:

Gene:
SLC4A7
Ensembl Gene ID:
ENSAPLG00000004253
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044648
40918313 - 40968808
50496