Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40944849_40949941_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40944849 - 40949941

Intron Length:

5093

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAG|GCAACTATC

5'SS Class:

strong_major

3'SS Sequence:

TATTTTAATCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTATTTTAATC

Flanking Amino Acid:

KTEENIGKTPGLLASPQSAP

Intron Amino Acid Position:

339

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.86

1.1

89.2

28.7

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

74.8

0.56

0.9

42.2

Minor 5ss

35.5

-1.6

3.9

43.3

Minor BPS

0.7

1.1

78.22

31.1

Associated Gene:

Gene:

SLC4A7

Ensembl Gene ID:

ENSAPLG00000004253

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019964

40917152 - 40968808

51657

ENSAPLT00000004504

40918335 - 40968808

50474

ENSAPLT00000044648

40918313 - 40968808

50496

ENSAPLT00000042560

40919156 - 40968808

49653

ENSAPLT00000034918

40917152 - 40968808

51657