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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40950311_40953035_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40950311 - 40953035
Intron Length:
2725

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAG|GCAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTATCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTGTTTTATCT
Flanking Amino Acid:
IPLVRSFADIGEGLSASRHS
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.4
1.03
0.9
81.2
36
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
83.2
0.75
0.8
81.7
34.6
Minor 5ss
23.4
-3.1
3.7
33.7
41.9
Minor BPS
64
0.52
1.7
82.72
39.3

Associated Gene:

Gene:
SLC4A7
Ensembl Gene ID:
ENSAPLG00000004253
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042560
40919156 - 40968808
49653
ENSAPLT00000034918
40917152 - 40968808
51657
ENSAPLT00000019964
40917152 - 40968808
51657
ENSAPLT00000004504
40918335 - 40968808
50474
ENSAPLT00000044648
40918313 - 40968808
50496