Gene Search

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

40953186 - 40955122

Intron Length:

1937

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTGCAGCA

5'SS Class:

weak_major

3'SS Sequence:

TCTTGTTATGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

ATAATTTTGATT

Flanking Amino Acid:

MRANTLDEIADMVLDNMIAS

Intron Amino Acid Position:

166

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

54.8

0.11

1.4

51.7

39.7

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

77.5

0.62

0.9

73.7

Minor 5ss

31.2

-2.1

3.4

40.2

45.4

Minor BPS

57.4

0.32

1.2

69.67

35.2

Associated Gene:

Gene:

SLC4A7

Ensembl Gene ID:

ENSAPLG00000004253

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025739

40756860 - 40968808

211949

ENSAPLT00000042560

40919156 - 40968808

49653

ENSAPLT00000019964

40917152 - 40968808

51657

ENSAPLT00000034918

40917152 - 40968808

51657

ENSAPLT00000018499

40918313 - 41023690

105378

ENSAPLT00000029136

40918313 - 40990694

72382

ENSAPLT00000045188

40918313 - 41010830

92518

ENSAPLT00000004504

40918335 - 40968808

50474

ENSAPLT00000026437

40917152 - 40999537

82386

ENSAPLT00000044648

40918313 - 40968808

50496

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40953186_40955122_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: