Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40955284 - 40956270

Intron Length:

987

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGCTAA

5'SS Class:

strong_major

3'SS Sequence:

GTACACATTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATAAAT

U12 Branch Point Sequence:

AAGAATATAAAT

Flanking Amino Acid:

GEEYEWKETARWLKFEEDVE

Intron Amino Acid Position:

112

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

71.5

36.8

Major BPS

74.5

0.61

79.6

29.1

Major PPT

68.5

0.42

63.2

42.4

Minor 5ss

43.6

-0.7

2.9

56.2

Minor BPS

43.2

-0.4

1.8

56.04

39.3

Associated Gene:

Gene:

SLC4A7

Ensembl Gene ID:

ENSAPLG00000004253

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025739

40756860 - 40968808

211949

ENSAPLT00000042560

40919156 - 40968808

49653

ENSAPLT00000019964

40917152 - 40968808

51657

ENSAPLT00000034918

40917152 - 40968808

51657

ENSAPLT00000018499

40918313 - 41023690

105378

ENSAPLT00000029136

40918313 - 40990694

72382

ENSAPLT00000045188

40918313 - 41010830

92518

ENSAPLT00000004504

40918335 - 40968808

50474

ENSAPLT00000026437

40917152 - 40999537

82386

ENSAPLT00000044648

40918313 - 40968808

50496

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40955284_40956270_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: