Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40956407 - 40957685

Intron Length:

1279

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAATACAT

5'SS Class:

major

3'SS Sequence:

CATTTTCTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

GTTCTTTTAATT

Flanking Amino Acid:

REDGRESPSYDTPSQRVQFI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.54

66.2

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

85.5

0.8

77.2

36.7

Minor 5ss

33.8

-1.8

3.2

45.3

43.6

Minor BPS

71.4

0.75

1.1

81.54

33.9

Associated Gene:

Gene:

SLC4A7

Ensembl Gene ID:

ENSAPLG00000004253

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026437

40917152 - 40999537

82386

ENSAPLT00000044648

40918313 - 40968808

50496

ENSAPLT00000004504

40918335 - 40968808

50474

ENSAPLT00000025739

40756860 - 40968808

211949

ENSAPLT00000042560

40919156 - 40968808

49653

ENSAPLT00000019964

40917152 - 40968808

51657

ENSAPLT00000034918

40917152 - 40968808

51657

ENSAPLT00000029136

40918313 - 40990694

72382

ENSAPLT00000045188

40918313 - 41010830

92518

ENSAPLT00000018499

40918313 - 41023690

105378

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40956407_40957685_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: