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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_409622_411639_F

Intron Information:

Intron Rank:
132701
Intron Class:
major
Intron Phase:
Intron Coordinates:
409622 - 411639
Intron Length:
2018

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CTTTCTTAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.2
85.2
32.2
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
83.1
0.74
0.8
77.2
36.9
Minor 5ss
34
-1.8
3.3
49.7
46.6
Minor BPS
69.8
0.62
1.7
78.6
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021319
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022968
408047 - 412402
4356