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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40968809_40990691_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40968809 - 40990691
Intron Length:
21883

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATTTC
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
ATTTTCTTAACT
Flanking Amino Acid:
MGHDEEAVVDM
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
0.9
77.3
31.8
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
84.1
0.77
0.8
81.3
30.7
Minor 5ss
44.3
-0.6
2.9
57.9
42.1
Minor BPS
89.7
1.32
0.8
98.16
24.3

Associated Gene:

Gene:
SLC4A7
Ensembl Gene ID:
ENSAPLG00000004253
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029136
40918313 - 40990694
72382