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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40968809_40999327_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
40968809 - 40999327
Intron Length:
30519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTTTGTGTA
5'SS Class:
major
3'SS Sequence:
CTTGTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
ATTTTCTTAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.2
68
36.8
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
84.1
0.77
0.8
81.3
30.7
Minor 5ss
38.9
-1.3
3.1
46.9
43
Minor BPS
89.7
1.32
0.8
98.16
24.3

Associated Gene:

Gene:
SLC4A7
Ensembl Gene ID:
ENSAPLG00000004253
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026437
40917152 - 40999537
82386