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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40968809_41023179_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40968809 - 41023179
Intron Length:
54371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
ATTTTCTTAACT
Flanking Amino Acid:
GIIHILYWDLGHDEEAVVDM
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
74.5
41.9
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
84.1
0.77
0.8
81.3
30.7
Minor 5ss
43.1
-0.8
2.9
54.7
43.7
Minor BPS
89.7
1.32
0.8
98.16
24.3

Associated Gene:

Gene:
SLC4A7
Ensembl Gene ID:
ENSAPLG00000004253
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018499
40918313 - 41023690
105378