Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_41058153_41069327_R

Intron Information:

Intron Rank:

148488

Intron Class:

major

Intron Phase:

Intron Coordinates:

41058153 - 41069327

Intron Length:

11175

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTGCTA

5'SS Class:

major

3'SS Sequence:

TATTTGTTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTGAC

U12 Branch Point Sequence:

TTTTTCCTATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.47

1.1

62.6

43.3

Major BPS

77.7

0.69

0.9

69.1

37.9

Major PPT

83.1

0.74

0.8

81.5

35.9

Minor 5ss

33.3

-1.9

3.6

47.7

47.8

Minor BPS

60.1

0.4

1.9

84.08

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027276

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037101

41057709 - 41070222

12514