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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_41076384_41076497_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41076384 - 41076497
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGCG
5'SS Class:
strong_major
3'SS Sequence:
GGCTTTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTAAC
U12 Branch Point Sequence:
TGCCCGCTAACG
Flanking Amino Acid:
TCGKADNNMQGNKVYVHPES
Intron Amino Acid Position:
350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
70.5
38.9
Major BPS
57.1
0.18
1.1
59
36
Major PPT
69.5
0.44
0.9
61.7
40
Minor 5ss
29.5
-2.3
3.4
38.5
46.7
Minor BPS
45
-0.5
2.4
54.45
46

Associated Gene:

Gene:
EOMES
Ensembl Gene ID:
ENSAPLG00000022951
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027116
41073036 - 41077545
4510