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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_41095821_41096717_R

Intron Information:

Intron Rank:
130582
Intron Class:
major
Intron Phase:
Intron Coordinates:
41095821 - 41096717
Intron Length:
897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCGTA
5'SS Class:
strong_major
3'SS Sequence:
CTCCAATTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTTCTCCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.4
39.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
71.3
0.48
0.9
64.1
35.3
Minor 5ss
38.5
-1.3
3.7
54.8
49.4
Minor BPS
61.5
0.44
1.9
84.92
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017499
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044784
41095624 - 41117951
22328
ENSAPLT00000038087
41095624 - 41099888
4265