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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_41095821_41097826_R

Intron Information:

Intron Rank:
130577
Intron Class:
major
Intron Phase:
Intron Coordinates:
41095821 - 41097826
Intron Length:
2006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCCAATTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTTCTCCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
75.1
34.9
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
71.3
0.48
0.9
64.1
35.3
Minor 5ss
28.8
-2.4
3.3
41.4
45.1
Minor BPS
61.5
0.44
1.9
84.92
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017499
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028547
41095624 - 41139054
43431