About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_41097992_41098927_R

Intron Information:

Intron Rank:
130578
Intron Class:
major
Intron Phase:
Intron Coordinates:
41097992 - 41098927
Intron Length:
936

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAT
U12 Branch Point Sequence:
GTATGTTGATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.8
34.5
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
84.8
0.78
0.7
78.2
30.7
Minor 5ss
41.8
-0.9
2.8
56.1
41.3
Minor BPS
42.4
-0.5
2
59.78
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017499
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044784
41095624 - 41117951
22328
ENSAPLT00000038087
41095624 - 41099888
4265
ENSAPLT00000028547
41095624 - 41139054
43431