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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_41099073_41138457_R

Intron Information:

Intron Rank:
130579
Intron Class:
major
Intron Phase:
Intron Coordinates:
41099073 - 41138457
Intron Length:
39385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATCCAT
U12 Branch Point Sequence:
ATGCTCTGCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.5
37.3
Major BPS
69.5
0.49
1.2
78.7
34.9
Major PPT
81.3
0.7
0.8
75.8
32.9
Minor 5ss
31.7
-2.1
3.6
47.8
47.9
Minor BPS
48.3
-0
1.9
68.36
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017499
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028547
41095624 - 41139054
43431