About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_41138618_41138776_R

Intron Information:

Intron Rank:
130580
Intron Class:
major
Intron Phase:
Intron Coordinates:
41138618 - 41138776
Intron Length:
159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TATCTCATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TCCCTCTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
77.8
38.7
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
76
0.58
0.9
69.6
35
Minor 5ss
31.6
-2.1
2.7
34.1
41.4
Minor BPS
59.1
0.36
1.6
72.48
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017499
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029875
41137927 - 41141438
3512