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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_41141634_41142181_F

Intron Information:

Intron Rank:
127608
Intron Class:
major
Intron Phase:
Intron Coordinates:
41141634 - 41142181
Intron Length:
548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTGCAT
U12 Branch Point Sequence:
TTGGCCTGCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
50.1
0
1.4
63
43.2
Major PPT
82.6
0.73
0.8
80.5
37
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
49.6
0.05
2
72.28
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018794
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018378
41141142 - 41143288
2147