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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4117543_4121657_R

Intron Information:

Intron Rank:
133594
Intron Class:
major
Intron Phase:
Intron Coordinates:
4117543 - 4121657
Intron Length:
4115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTTATGCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.3
17.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89.9
0.9
0.7
85
29.3
Minor 5ss
39.5
-1.2
2.8
49
47.2
Minor BPS
47.3
-0.1
2.3
73.98
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019146
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023264
4116857 - 4145771
28915