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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_41195279_41206312_R

Intron Information:

Intron Rank:
135181
Intron Class:
major
Intron Phase:
Intron Coordinates:
41195279 - 41206312
Intron Length:
11034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACCTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.8
22.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
90.9
0.92
0.6
87.5
22.9
Minor 5ss
39.6
-1.2
3.1
55.7
48.5
Minor BPS
57.7
0.32
2.1
85.95
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020094
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038587
41195201 - 41207947
12747
ENSAPLT00000021071
41189382 - 41235776
46395
ENSAPLT00000038842
41186972 - 41206381
19410