About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4122003_4145752_R

Intron Information:

Intron Rank:
133595
Intron Class:
major
Intron Phase:
Intron Coordinates:
4122003 - 4145752
Intron Length:
23750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGACCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTCCTGACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.7
31.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
71.7
0.49
0.9
65.2
35
Minor 5ss
30
-2.3
3.2
38.4
40.8
Minor BPS
66.3
0.51
1.7
78.95
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019146
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023264
4116857 - 4145771
28915