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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_41235187_41239917_F

Intron Information:

Intron Rank:
131990
Intron Class:
major
Intron Phase:
Intron Coordinates:
41235187 - 41239917
Intron Length:
4731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATCCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCATTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTTAACATACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
72.1
37.7
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
84
0.77
0.8
77.5
35.6
Minor 5ss
34.8
-1.7
2.9
45.4
42.6
Minor BPS
49.9
0.07
2.1
79.09
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020883
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031233
41234659 - 41243301
8643