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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_41307488_41308586_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41307488 - 41308586
Intron Length:
1099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCATT
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TCTTTTTTACAG
Flanking Amino Acid:
QLKTEVETQQVMRNLNCNQS
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
83.5
35.1
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
88.3
0.86
0.7
83.2
32
Minor 5ss
55
0.17
2.5
74.6
41.7
Minor BPS
51.6
-0
1.8
59.29
43.1

Associated Gene:

Gene:
AZI2
Ensembl Gene ID:
ENSAPLG00000023912
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048216
41297458 - 41316430
18973
ENSAPLT00000031782
41297458 - 41316430
18973