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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_41310458_41314537_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
41310458 - 41314537
Intron Length:
4080

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATTCATT
5'SS Class:
weak_major
3'SS Sequence:
TCTTTTTAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TCTTTTTAAACA
Flanking Amino Acid:
HESFHTSADTADMEELIEDD
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.1
69
41.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
79.7
0.67
0.9
77.5
34.7
Minor 5ss
55.7
0.19
2.5
71.9
40
Minor BPS
64.7
0.46
1.6
73.92
38.7

Associated Gene:

Gene:
AZI2
Ensembl Gene ID:
ENSAPLG00000023912
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031782
41297458 - 41316430
18973