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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_41310458_41315522_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
41310458 - 41315522
Intron Length:
5065

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAATGTC
5'SS Class:
major
3'SS Sequence:
TCTTTTTAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TCTTTTTAAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
69.4
35.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
79.7
0.67
0.9
77.5
34.7
Minor 5ss
31.6
-2.1
3.4
43.7
44.2
Minor BPS
64.7
0.46
1.6
73.92
38.7

Associated Gene:

Gene:
AZI2
Ensembl Gene ID:
ENSAPLG00000023912
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048216
41297458 - 41316430
18973