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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_41379558_41381020_F

Intron Information:

Intron Rank:
132033
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
41379558 - 41381020
Intron Length:
1463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTATTTCT
5'SS Class:
major
3'SS Sequence:
ATTGTGAGATTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
TTTTTCTCCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.2
75.4
34.7
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
54.9
0.11
1.1
53.2
45.3
Minor 5ss
39.3
-1.2
2.7
52.2
44.2
Minor BPS
59.2
0.37
2
83.48
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020919
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042428
41379344 - 41381916
2573