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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_41382880_41485997_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41382880 - 41485997
Intron Length:
103118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTATTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAA
U12 Branch Point Sequence:
AATCTTCTATTT
Flanking Amino Acid:
RHGGDKDDKKRTTANKTSGA
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.3
39.5
Major BPS
66.8
0.42
1.1
69.4
37.7
Major PPT
88.8
0.87
0.7
84.2
30.4
Minor 5ss
30.6
-2.2
3.4
39.1
46.7
Minor BPS
44.9
-0.3
1.8
61.18
36.7

Associated Gene:

Gene:
RBMS3
Ensembl Gene ID:
ENSAPLG00000012270
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038656
41382680 - 42067514
684835
ENSAPLT00000035141
41382348 - 42074119
691772
ENSAPLT00000024427
41382680 - 42074119
691440