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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4147786_4147890_R

Intron Information:

Intron Rank:
131384
Intron Class:
major
Intron Phase:
Intron Coordinates:
4147786 - 4147890
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGGCTC
5'SS Class:
major
3'SS Sequence:
AGGCATTTTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGACAA
U12 Branch Point Sequence:
TGCTCCCTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64
0.33
1.1
57.2
41.8
Major BPS
48.4
-0.1
1.2
56.4
39.5
Major PPT
65.3
0.35
1
57.8
42.4
Minor 5ss
32.8
-2
3.5
51.7
45
Minor BPS
63
0.4
1.7
72.32
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017895
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030329
4147485 - 4148311
827