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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_41484025_41485997_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41484025 - 41485997
Intron Length:
1973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTATTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAA
U12 Branch Point Sequence:
AATCTTCTATTT
Flanking Amino Acid:
MAKLLQRTTANKTSGA
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.3
1.04
0.8
79.7
35.4
Major BPS
66.8
0.42
1.1
69.4
37.7
Major PPT
88.8
0.87
0.7
84.2
30.4
Minor 5ss
33
-1.9
3.2
43.9
43.9
Minor BPS
44.9
-0.3
1.8
61.18
36.7

Associated Gene:

Gene:
RBMS3
Ensembl Gene ID:
ENSAPLG00000012270
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012776
41483807 - 42073415
589609