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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4150037_4151267_F

Intron Information:

Intron Rank:
129223
Intron Class:
major
Intron Phase:
Intron Coordinates:
4150037 - 4151267
Intron Length:
1231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTTGG
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTTTTTTTGTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1.3
69.7
43.7
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
35
-1.7
2.7
41.5
44.9
Minor BPS
46.8
-0.1
3.4
81.5
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019509
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046806
4149660 - 4152422
2763