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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_41589989_41735148_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41589989 - 41735148
Intron Length:
145160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TTTCTGTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTAAC
U12 Branch Point Sequence:
AGCCCAGTAACA
Flanking Amino Acid:
SYTYCAGHPAQSYAPAPHPM
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
80.4
34
Major BPS
54.4
0.11
1.2
57
36.4
Major PPT
88.2
0.86
0.8
80.5
37
Minor 5ss
40.3
-1.1
2.9
61.3
43
Minor BPS
45.6
-0.3
2.2
57.43
41.4

Associated Gene:

Gene:
RBMS3
Ensembl Gene ID:
ENSAPLG00000012270
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035141
41382348 - 42074119
691772
ENSAPLT00000024427
41382680 - 42074119
691440
ENSAPLT00000012776
41483807 - 42073415
589609
ENSAPLT00000038656
41382680 - 42067514
684835