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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_41735319_41760727_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41735319 - 41760727
Intron Length:
25409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAAGTGCA
5'SS Class:
major
3'SS Sequence:
GTTTTCTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAACAT
U12 Branch Point Sequence:
ATAACATGTATT
Flanking Amino Acid:
TDQDLIKLCQPYGKIVSTKA
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.3
66.3
39.6
Major BPS
62.2
0.3
1.1
69.4
35.8
Major PPT
83.6
0.76
0.7
82.1
30
Minor 5ss
34.8
-1.7
3.2
46.2
42.2
Minor BPS
43.9
-0.4
2
62.56
41

Associated Gene:

Gene:
RBMS3
Ensembl Gene ID:
ENSAPLG00000012270
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035141
41382348 - 42074119
691772
ENSAPLT00000024427
41382680 - 42074119
691440
ENSAPLT00000012776
41483807 - 42073415
589609
ENSAPLT00000038656
41382680 - 42067514
684835
ENSAPLT00000035175
41638541 - 42074119
435579