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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_41926673_41936283_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41926673 - 41936283
Intron Length:
9611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACCC
5'SS Class:
major
3'SS Sequence:
TTCTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTCAT
U12 Branch Point Sequence:
TTGCCTCTACCC
Flanking Amino Acid:
NGVSRGVGFARMESTEKCEV
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
65.8
38.4
Major BPS
70
0.5
1.1
71.2
35.2
Major PPT
90.9
0.92
0.6
84.1
30.9
Minor 5ss
32.6
-2
3.1
43.3
43.8
Minor BPS
48.7
-0.1
1.9
64.23
41.5

Associated Gene:

Gene:
RBMS3
Ensembl Gene ID:
ENSAPLG00000012270
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035175
41638541 - 42074119
435579
ENSAPLT00000035141
41382348 - 42074119
691772
ENSAPLT00000024427
41382680 - 42074119
691440
ENSAPLT00000012776
41483807 - 42073415
589609
ENSAPLT00000038656
41382680 - 42067514
684835