Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_41936364_41987087_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41936364 - 41987087

Intron Length:

50724

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTGTA

5'SS Class:

strong_major

3'SS Sequence:

CTTGTCTTCACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTAAT

U12 Branch Point Sequence:

CTTGTCTTCACA

Flanking Amino Acid:

KYLKTPPGLPAPTEPLLCKF

Intron Amino Acid Position:

274

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.5

1.12

0.6

90.6

20.3

Major BPS

79.3

0.73

1.1

77.9

34.9

Major PPT

81.3

0.71

0.8

75.7

32.9

Minor 5ss

36.3

-1.6

3.3

47.2

Minor BPS

57.6

0.23

1.9

70.02

42.9

Associated Gene:

Gene:

RBMS3

Ensembl Gene ID:

ENSAPLG00000012270

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035175

41638541 - 42074119

435579

ENSAPLT00000035141

41382348 - 42074119

691772

ENSAPLT00000024427

41382680 - 42074119

691440

ENSAPLT00000012776

41483807 - 42073415

589609

ENSAPLT00000038656

41382680 - 42067514

684835