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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_41996647_42004029_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41996647 - 42004029
Intron Length:
7383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
GGTTCAAAAATC
Flanking Amino Acid:
TYDPTAAIQNGFYSSPYSIP
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.7
33.7
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
88.8
0.87
0.7
83.9
31
Minor 5ss
34.7
-1.7
3
41.3
44.8
Minor BPS
44.9
-0.4
2.1
58.34
40.1

Associated Gene:

Gene:
RBMS3
Ensembl Gene ID:
ENSAPLG00000012270
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035175
41638541 - 42074119
435579
ENSAPLT00000035141
41382348 - 42074119
691772
ENSAPLT00000024427
41382680 - 42074119
691440
ENSAPLT00000012776
41483807 - 42073415
589609
ENSAPLT00000038656
41382680 - 42067514
684835