About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42004127_42006766_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42004127 - 42006766
Intron Length:
2640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTCAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTGATATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTGTTCTAATT
Flanking Amino Acid:
IAASPVSTYQVQSTSWMPHP
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1
69
43.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.8
0.54
1
67.4
42.5
Minor 5ss
32.5
-2
3.1
40.5
45.6
Minor BPS
52.4
0.15
1.7
71.16
41

Associated Gene:

Gene:
RBMS3
Ensembl Gene ID:
ENSAPLG00000012270
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038656
41382680 - 42067514
684835
ENSAPLT00000035175
41638541 - 42074119
435579
ENSAPLT00000035141
41382348 - 42074119
691772
ENSAPLT00000012776
41483807 - 42073415
589609